MLOC_54964 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.668819.791749.894958.44385
LEAShoots from the seedlings (10 cm shoot stage)5.369061.431181.057772.2864
INF1Young developing inflorescences (5mm)25.482717.800213.918615.378
INF2Developing inflorescences (1-1.5 cm)15.826118.446616.478517.3093
ROORoots from the seedlings (10 cm shoot stage)2.47786.332676.536556.43691
NODDeveloping tillers at six leaf stage, 3rd internode0.951771.53011.638074.90288
CAR5Developing grain, bracts removed (5 DPA)9.023358.016457.992177.5122
CAR15Developing grain, bracts removed (15 DPA)2.128131.889572.225914.21861



CDS Structure of MLOC_54964






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54964.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250043.1NoneNoneNoneNone
MLOC_54964.3CUST_3326_PI427708080AvailableAvailablecontig_39536 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g46650.1 -1 8e-172 520 343/721 (48%) 13102.m05237 protein ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
TAIR PP10 AT5G46740.1 -1 2e-91 308 206/552 (37%) | Symbols: UBP21 | ubiquitin-specific protease 21 | chr5:18965410-18968492 REVERSE LENGTH=732