MLOC_54963 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.238839.308219.806199.00457
LEAShoots from the seedlings (10 cm shoot stage)25.55744.476477.2519110.3395
INF1Young developing inflorescences (5mm)3.955933.659562.867033.24435
INF2Developing inflorescences (1-1.5 cm)6.468886.517256.903177.80475
ROORoots from the seedlings (10 cm shoot stage)0.8941572.861743.651993.34593
NODDeveloping tillers at six leaf stage, 3rd internode3.049965.951850.039376813.1842
CAR5Developing grain, bracts removed (5 DPA)75.358568.554676.283777.6358
CAR15Developing grain, bracts removed (15 DPA)9.455136.53989.9250321.813



CDS Structure of MLOC_54963






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54963.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250171.1NoneNoneNoneNone
MLOC_54963.1CUST_3325_PI427708080AvailableAvailablecontig_39536 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g46680.1 +3 0.0 2107 1127/1255 (90%) 13102.m05240 protein multidrug resistance protein, putative, expressed
TAIR PP10 AT4G25960.1 +3 0.0 1761 919/1213 (76%) | Symbols: PGP2 | P-glycoprotein 2 | chr4:13177438-13183425 FORWARD LENGTH=1273