MLOC_54943 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains96.53588.531697.3353101.081
LEAShoots from the seedlings (10 cm shoot stage)80.5191126.393214.177126.283
INF1Young developing inflorescences (5mm)28.380928.590528.465826.451
INF2Developing inflorescences (1-1.5 cm)37.374531.911445.772444.2912
ROORoots from the seedlings (10 cm shoot stage)326.247222.753232.016303.449
NODDeveloping tillers at six leaf stage, 3rd internode77.06755.938470.56169.743
CAR5Developing grain, bracts removed (5 DPA)41.949143.904443.56647.2657
CAR15Developing grain, bracts removed (15 DPA)28.099428.095426.156570.1246



CDS Structure of MLOC_54943






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54943.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252919.1NoneNoneNoneNone
MLOC_54943.2CUST_3323_PI427708080AvailableAvailablecontig_39521 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g50130.1 -2 2e-79 241 127/148 (86%) 13103.m05452 protein microsomal glutathione S-transferase 3, putative, expressed
TAIR PP10 AT1G65820.1 -2 2e-56 181 91/145 (63%) microsomal glutathione s-transferase, putative | chr1:24485213-24486682 FORWARD LENGTH=146