MLOC_54942 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.806156.865625.865637.34389
LEAShoots from the seedlings (10 cm shoot stage)8.295894.230956.22916.25566
INF1Young developing inflorescences (5mm)16.264116.677414.006215.1833
INF2Developing inflorescences (1-1.5 cm)12.984713.571311.17415.836
ROORoots from the seedlings (10 cm shoot stage)3.709946.147534.753818.65602
NODDeveloping tillers at six leaf stage, 3rd internode0.2282230.506621.061712.43665
CAR5Developing grain, bracts removed (5 DPA)7.006456.961356.608167.74685
CAR15Developing grain, bracts removed (15 DPA)2.410563.116731.938096.66353



CDS Structure of MLOC_54942






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54942.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54942.2CUST_13292_PI427708080AvailableAvailablecontig_39521 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g50120.1 +1 0.0 552 282/446 (63%) 13103.m05451 protein zinc finger family protein, putative, expressed
TAIR PP10 AT1G48570.1 +1 5e-81 263 155/403 (38%) zinc finger (Ran-binding) family protein | chr1:17955455-17957661 REVERSE LENGTH=455