- Predicted Gene MLOC_54942
MLOC_54942 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54942_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54942_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 5.80615 | 6.86562 | 5.86563 | 7.34389 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 8.29589 | 4.23095 | 6.2291 | 6.25566 |
INF1 | Young developing inflorescences (5mm) | 16.2641 | 16.6774 | 14.0062 | 15.1833 |
INF2 | Developing inflorescences (1-1.5 cm) | 12.9847 | 13.5713 | 11.174 | 15.836 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.70994 | 6.14753 | 4.75381 | 8.65602 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.228223 | 0.50662 | 1.06171 | 2.43665 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.00645 | 6.96135 | 6.60816 | 7.74685 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.41056 | 3.11673 | 1.93809 | 6.66353 |
CDS Structure of MLOC_54942
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54942.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g50120.1 |
+1 |
0.0 |
552 |
282/446 (63%) |
13103.m05451 protein zinc finger family protein, putative, expressed |
TAIR PP10 |
AT1G48570.1 |
+1 |
5e-81 |
263 |
155/403 (38%) |
zinc finger (Ran-binding) family protein | chr1:17955455-17957661 REVERSE LENGTH=455 |