- Predicted Gene MLOC_54940
MLOC_54940 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 8.13413 | 20.7559 | 20.7496 | 19.9964 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 36.6979 | 23.5172 | 12.539 | 22.9858 |
INF1 | Young developing inflorescences (5mm) | 2.84387 | 3.87234 | 2.48005 | 2.84046 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.76322 | 1.21223 | 1.22496 | 1.67862 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.52419 | 21.4562 | 13.8793 | 28.6612 |
NOD | Developing tillers at six leaf stage, 3rd internode | 71.7876 | 88.5233 | 73.3119 | 350.174 |
CAR5 | Developing grain, bracts removed (5 DPA) | 27.6542 | 26.358 | 28.9565 | 30.63 |
CAR15 | Developing grain, bracts removed (15 DPA) | 9.00317 | 7.93724 | 9.91243 | 21.4505 |
CDS Structure of MLOC_54940
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54940.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g43684.1 |
+1 |
0.0 |
1904 |
1080/1572 (69%) |
13103.m04693 protein KIP1, putative, expressed |
TAIR PP10 |
AT4G14760.1 |
+1 |
2e-144 |
495 |
473/1743 (27%) |
kinase interacting (KIP1-like) family protein | chr4:8475718-8481094 FORWARD LENGTH=1710 |