MLOC_54940 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.1341320.755920.749619.9964
LEAShoots from the seedlings (10 cm shoot stage)36.697923.517212.53922.9858
INF1Young developing inflorescences (5mm)2.843873.872342.480052.84046
INF2Developing inflorescences (1-1.5 cm)1.763221.212231.224961.67862
ROORoots from the seedlings (10 cm shoot stage)9.5241921.456213.879328.6612
NODDeveloping tillers at six leaf stage, 3rd internode71.787688.523373.3119350.174
CAR5Developing grain, bracts removed (5 DPA)27.654226.35828.956530.63
CAR15Developing grain, bracts removed (15 DPA)9.003177.937249.9124321.4505



CDS Structure of MLOC_54940






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54940.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54940.1CUST_13291_PI427708080AvailableAvailablecontig_39516 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g43684.1 +1 0.0 1904 1080/1572 (69%) 13103.m04693 protein KIP1, putative, expressed
TAIR PP10 AT4G14760.1 +1 2e-144 495 473/1743 (27%) kinase interacting (KIP1-like) family protein | chr4:8475718-8481094 FORWARD LENGTH=1710