- Predicted Gene MLOC_54939
MLOC_54939 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54939_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54939_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 18.7556 | 23.2069 | 22.16 | 21.6907 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 31.6671 | 24.5223 | 25.4699 | 23.8865 |
INF1 | Young developing inflorescences (5mm) | 64.6777 | 73.3497 | 73.6568 | 56.5506 |
INF2 | Developing inflorescences (1-1.5 cm) | 79.6505 | 85.9292 | 81.1474 | 88.259 |
ROO | Roots from the seedlings (10 cm shoot stage) | 12.1977 | 18.835 | 16.9615 | 21.7984 |
NOD | Developing tillers at six leaf stage, 3rd internode | 21.6372 | 31.9301 | 45.8202 | 113.645 |
CAR5 | Developing grain, bracts removed (5 DPA) | 29.5675 | 30.7103 | 31.6844 | 29.253 |
CAR15 | Developing grain, bracts removed (15 DPA) | 12.423 | 13.0012 | 11.211 | 26.9258 |
CDS Structure of MLOC_54939
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54939.5
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g04040.1 |
+3 |
0.0 |
606 |
363/396 (92%) |
13102.m00405 protein RecF/RecN/SMC N terminal domain containing protein, expressed |
TAIR PP10 |
AT2G27170.2 |
+3 |
2e-133 |
426 |
258/397 (65%) |
| Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204 |