MLOC_54939 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.755623.206922.1621.6907
LEAShoots from the seedlings (10 cm shoot stage)31.667124.522325.469923.8865
INF1Young developing inflorescences (5mm)64.677773.349773.656856.5506
INF2Developing inflorescences (1-1.5 cm)79.650585.929281.147488.259
ROORoots from the seedlings (10 cm shoot stage)12.197718.83516.961521.7984
NODDeveloping tillers at six leaf stage, 3rd internode21.637231.930145.8202113.645
CAR5Developing grain, bracts removed (5 DPA)29.567530.710331.684429.253
CAR15Developing grain, bracts removed (15 DPA)12.42313.001211.21126.9258



CDS Structure of MLOC_54939






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54939.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368207NoneNoneNoneNone
MLOC_54939.5CUST_3322_PI427708080AvailableAvailablecontig_39514 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g04040.1 +3 0.0 606 363/396 (92%) 13102.m00405 protein RecF/RecN/SMC N terminal domain containing protein, expressed
TAIR PP10 AT2G27170.2 +3 2e-133 426 258/397 (65%) | Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204