MLOC_54933 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.030314.273219.39817.0949
LEAShoots from the seedlings (10 cm shoot stage)7.1305310.119613.16657.99186
INF1Young developing inflorescences (5mm)0.6592470.4890530.9389570.910803
INF2Developing inflorescences (1-1.5 cm)0.4903710.5749740.7329120.92019
ROORoots from the seedlings (10 cm shoot stage)21.027323.792721.056126.7165
NODDeveloping tillers at six leaf stage, 3rd internode50.690347.338350.1068122.255
CAR5Developing grain, bracts removed (5 DPA)3.468534.444373.55324.37157
CAR15Developing grain, bracts removed (15 DPA)0.278860.6078230.3741812.1166



CDS Structure of MLOC_54933






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54933.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363736NoneNoneNoneNone
MLOC_54933.3CUST_3321_PI427708080AvailableAvailablecontig_39509 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g31760.1 -2 1e-139 421 272/373 (73%) 13105.m03262 protein annexin, putative, expressed
TAIR PP10 AT2G38760.1 -2 5e-71 238 142/321 (44%) | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16201086-16202490 FORWARD LENGTH=321