MLOC_54932 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains41.925335.698748.433838.0128
LEAShoots from the seedlings (10 cm shoot stage)21.73116.028217.178415.1928
INF1Young developing inflorescences (5mm)1.089291.852871.436231.06807
INF2Developing inflorescences (1-1.5 cm)1.262821.190421.138351.14661
ROORoots from the seedlings (10 cm shoot stage)32.849233.620633.173537.234
NODDeveloping tillers at six leaf stage, 3rd internode124.33553.894929.3864147.688
CAR5Developing grain, bracts removed (5 DPA)7.4604511.018810.2848.73377
CAR15Developing grain, bracts removed (15 DPA)1.971452.399282.13084.388



CDS Structure of MLOC_54932






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54932.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250893.1NoneNoneNoneNone
MLOC_54932.1CUST_3320_PI427708080AvailableAvailablecontig_39509 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g31750.1 +1 1e-162 503 257/317 (81%) 13105.m03261 protein annexin, putative, expressed
TAIR PP10 AT2G38750.1 +1 8e-67 232 142/314 (45%) | Symbols: ANNAT4 | annexin 4 | chr2:16196582-16198431 REVERSE LENGTH=319