- Predicted Gene MLOC_54900
MLOC_54900 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 6.41424 | 13.4695 | 10.5894 | 13.7916 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 8.57883 | 6.41377 | 5.81449 | 6.6032 |
| INF1 | Young developing inflorescences (5mm) | 35.8779 | 33.8526 | 32.271 | 33.1337 |
| INF2 | Developing inflorescences (1-1.5 cm) | 33.4216 | 34.1258 | 28.6397 | 41.3693 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 4.88408 | 12.2561 | 9.68449 | 16.7864 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 1.3055 | 1.67447 | 3.15915 | 6.93277 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 15.7144 | 14.9572 | 15.013 | 17.6588 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.32941 | 5.19578 | 4.04247 | 13.49 |
CDS Structure of MLOC_54900
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54900.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g01480.1 |
-2 |
0.0 |
843 |
429/556 (77%) |
13104.m00057 protein zinc finger C-x8-C-x5-C-x3-H type family protein, expressed |
| TAIR PP10 |
AT2G28450.2 |
-2 |
0.0 |
583 |
300/570 (53%) |
zinc finger (CCCH-type) family protein | chr2:12162180-12165761 REVERSE LENGTH=804 |