MLOC_5490 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.86751.153271.590081.27586
LEAShoots from the seedlings (10 cm shoot stage)0.6777180.6694350.5303960.464189
INF1Young developing inflorescences (5mm)2.89322.72692.939272.02831
INF2Developing inflorescences (1-1.5 cm)2.233372.091931.887571.96832
ROORoots from the seedlings (10 cm shoot stage)0.9547571.339481.502811.26105
NODDeveloping tillers at six leaf stage, 3rd internode0.3080430.3505421.511671.45443
CAR5Developing grain, bracts removed (5 DPA)2.017112.747412.816362.01225
CAR15Developing grain, bracts removed (15 DPA)0.8022930.2878310.3045251.09026



CDS Structure of MLOC_5490






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5490.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5490.1CUST_13283_PI427708080AvailableAvailablecontig_136325 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g36540.1 -3 0.0 741 406/542 (75%) 13101.m03700 protein pentatricopeptide, putative
TAIR PP10 AT1G64310.1 -3 4e-110 355 206/508 (41%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23866053-23867711 FORWARD LENGTH=552