MLOC_54893 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.76777.372017.457118.80124
LEAShoots from the seedlings (10 cm shoot stage)00.13995500.194205
INF1Young developing inflorescences (5mm)0.05606590.03344640.03570030.0368866
INF2Developing inflorescences (1-1.5 cm)0.0292498000.0365017
ROORoots from the seedlings (10 cm shoot stage)32.408216.047415.189318.3481
NODDeveloping tillers at six leaf stage, 3rd internode0.0483247000.00295823
CAR5Developing grain, bracts removed (5 DPA)0.0371812000.0343028
CAR15Developing grain, bracts removed (15 DPA)0.02623720.09340720.03767130.144735



CDS Structure of MLOC_54893






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54893.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54893.1CUST_13280_PI427708080AvailableAvailablecontig_39476 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g59160.1 -3 3e-175 500 243/326 (75%) 13104.m06235 protein peroxidase precursor, putative, expressed
TAIR PP10 AT1G71695.1 -3 1e-79 254 143/316 (45%) Peroxidase superfamily protein | chr1:26964359-26966557 FORWARD LENGTH=358