MLOC_54892 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains45.545734.715937.56236.5643
LEAShoots from the seedlings (10 cm shoot stage)0.05939520.07398440.302010.108073
INF1Young developing inflorescences (5mm)0.14514000.131022
INF2Developing inflorescences (1-1.5 cm)0.0293047000.0366304
ROORoots from the seedlings (10 cm shoot stage)120.93265.829175.119275.1183
NODDeveloping tillers at six leaf stage, 3rd internode00.0072507900.0483762
CAR5Developing grain, bracts removed (5 DPA)0.0369921000.0341735
CAR15Developing grain, bracts removed (15 DPA)00.030568900.106168



CDS Structure of MLOC_54892






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54892.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365672NoneNoneNoneNone
MLOC_54892.1CUST_3314_PI427708080AvailableAvailablecontig_39476 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g59150.1 +1 6e-138 404 203/313 (65%) 13104.m06232 protein peroxidase precursor, putative, expressed
TAIR PP10 AT1G71695.1 +1 2e-91 285 155/317 (49%) Peroxidase superfamily protein | chr1:26964359-26966557 FORWARD LENGTH=358