MLOC_5489 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06781790.2119220.2331240.182445
LEAShoots from the seedlings (10 cm shoot stage)0.05565890.2833090.04544540.119404
INF1Young developing inflorescences (5mm)0.6144070.4041120.3055160.389879
INF2Developing inflorescences (1-1.5 cm)0.3362670.4014630.1731470.36578
ROORoots from the seedlings (10 cm shoot stage)00.1920150.208740.33176
NODDeveloping tillers at six leaf stage, 3rd internode0.1673040.03313310.2047070.23382
CAR5Developing grain, bracts removed (5 DPA)0.1771190.2692260.1335390.205805
CAR15Developing grain, bracts removed (15 DPA)0.09806590.1344610.09719190.261809



CDS Structure of MLOC_5489






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5489.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5489.2CUST_13279_PI427708080AvailableAvailablecontig_136325 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g36550.1 -2 0.0 602 294/328 (90%) 13101.m03701 protein protein kinase family protein, putative
TAIR PP10 AT1G51940.1 -2 6e-106 335 166/331 (50%) protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr1:19296092-19298941 REVERSE LENGTH=651