MLOC_54883 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.475084.282144.701854.19744
LEAShoots from the seedlings (10 cm shoot stage)2.683130.8166551.766951.58757
INF1Young developing inflorescences (5mm)14.492814.330412.751512.3938
INF2Developing inflorescences (1-1.5 cm)12.721316.311412.705916.7578
ROORoots from the seedlings (10 cm shoot stage)1.747323.042872.229923.60048
NODDeveloping tillers at six leaf stage, 3rd internode0.6797380.6064470.8738512.25901
CAR5Developing grain, bracts removed (5 DPA)3.6763.736063.556653.83435
CAR15Developing grain, bracts removed (15 DPA)0.661580.4760070.8533871.53971



CDS Structure of MLOC_54883






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54883.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54883.1CUST_13278_PI427708080AvailableAvailablecontig_39471 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g61620.2 -2 0.0 783 521/907 (57%) 13103.m06786 protein expressed protein
TAIR PP10 AT5G26910.3 -2 9e-27 118 214/925 (23%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1). | chr5:9466169-9469523 REVERSE LENGTH=852