- Predicted Gene MLOC_54883
MLOC_54883 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 2.47508 | 4.28214 | 4.70185 | 4.19744 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.68313 | 0.816655 | 1.76695 | 1.58757 |
INF1 | Young developing inflorescences (5mm) | 14.4928 | 14.3304 | 12.7515 | 12.3938 |
INF2 | Developing inflorescences (1-1.5 cm) | 12.7213 | 16.3114 | 12.7059 | 16.7578 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.74732 | 3.04287 | 2.22992 | 3.60048 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.679738 | 0.606447 | 0.873851 | 2.25901 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.676 | 3.73606 | 3.55665 | 3.83435 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.66158 | 0.476007 | 0.853387 | 1.53971 |
CDS Structure of MLOC_54883
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54883.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g61620.2 |
-2 |
0.0 |
783 |
521/907 (57%) |
13103.m06786 protein expressed protein |
TAIR PP10 |
AT5G26910.3 |
-2 |
9e-27 |
118 |
214/925 (23%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1). | chr5:9466169-9469523 REVERSE LENGTH=852 |