MLOC_54858 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.112322.756462.598352.80271
LEAShoots from the seedlings (10 cm shoot stage)2.281812.048112.550521.95481
INF1Young developing inflorescences (5mm)1.45381.438381.756151.33215
INF2Developing inflorescences (1-1.5 cm)1.534371.526791.784861.75502
ROORoots from the seedlings (10 cm shoot stage)9.366914.898945.808576.69257
NODDeveloping tillers at six leaf stage, 3rd internode2.140922.36812.451247.61744
CAR5Developing grain, bracts removed (5 DPA)1.944131.688411.987171.83282
CAR15Developing grain, bracts removed (15 DPA)0.5963560.6406840.7425171.54986



CDS Structure of MLOC_54858






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54858.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362651NoneNoneNoneNone
MLOC_54858.3CUST_18109_PI427708080AvailableAvailablecontig_39440 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g44110.1 -3 0.0 632 327/399 (82%) 13104.m04390 protein hydrolase, putative, expressed
TAIR PP10 AT5G54140.1 -3 2e-146 441 230/404 (57%) | Symbols: ILL3 | IAA-leucine-resistant (ILR1)-like 3 | chr5:21965833-21967834 FORWARD LENGTH=428