MLOC_5484 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 55.0977 | 96.869 | 91.8602 | 89.4613 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 110.394 | 54.914 | 55.2362 | 68.5551 |
| INF1 | Young developing inflorescences (5mm) | 97.445 | 84.8755 | 78.7397 | 74.8131 |
| INF2 | Developing inflorescences (1-1.5 cm) | 83.4975 | 99.7907 | 98.3006 | 105.836 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 43.8243 | 68.5804 | 52.3649 | 85.3349 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 89.0224 | 92.8409 | 48.6408 | 315.145 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 88.555 | 80.813 | 82.6099 | 84.0741 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 16.2064 | 15.3898 | 17.2839 | 36.3413 |
CDS Structure of MLOC_5484
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5484.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g24220.1 |
+3 |
0.0 |
1403 |
727/1002 (73%) |
13103.m02863 protein villin protein, putative, expressed |
| TAIR PP10 |
AT2G41740.1 |
+3 |
0.0 |
1170 |
619/1010 (61%) |
| Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410962-17416878 REVERSE LENGTH=976 |
