MLOC_54834 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains536.952360.635364.603456.264
LEAShoots from the seedlings (10 cm shoot stage)172.291109.303136.498126.368
INF1Young developing inflorescences (5mm)491.467446.761432.402436.279
INF2Developing inflorescences (1-1.5 cm)359.885322.439343.381424.144
ROORoots from the seedlings (10 cm shoot stage)325.194329.03355.045461.256
NODDeveloping tillers at six leaf stage, 3rd internode41.932145.193382.566174.133
CAR5Developing grain, bracts removed (5 DPA)324.75343.406317.591380.24
CAR15Developing grain, bracts removed (15 DPA)70.272770.964360.3932182.836



CDS Structure of MLOC_54834






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54834.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354724NoneNoneNoneNone
MLOC_54834.1CUST_3307_PI427708080AvailableAvailablecontig_39431 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49030.1 +1 2e-122 352 167/178 (94%) 13105.m05238 protein 60S ribosomal protein L18a, putative, expressed
TAIR PP10 AT2G34480.1 +1 9e-115 332 159/178 (89%) Ribosomal protein L18ae/LX family protein | chr2:14532916-14534161 REVERSE LENGTH=178