MLOC_54829 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.632474.783894.90574.13886
LEAShoots from the seedlings (10 cm shoot stage)18.855723.956423.185517.0286
INF1Young developing inflorescences (5mm)6.983516.313667.928025.38542
INF2Developing inflorescences (1-1.5 cm)5.895964.908956.121495.54757
ROORoots from the seedlings (10 cm shoot stage)10.00766.558388.891417.92087
NODDeveloping tillers at six leaf stage, 3rd internode17.844618.352314.393549.3152
CAR5Developing grain, bracts removed (5 DPA)3.093593.381593.78412.98991
CAR15Developing grain, bracts removed (15 DPA)0.1671130.138580.2631150.369286



CDS Structure of MLOC_54829






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54829.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250795.1NoneNoneNoneNone
MLOC_54829.2CUST_3305_PI427708080AvailableAvailablecontig_39427 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g49040.1 -2 2e-137 439 327/461 (71%) 13106.m05230 protein Myb-like DNA-binding domain containing protein, putative, expressed
TAIR PP10 AT3G13040.2 -2 1e-56 207 168/335 (50%) myb-like HTH transcriptional regulator family protein | chr3:4172415-4174456 REVERSE LENGTH=449