MLOC_54800 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.764744.081446.25630
LEAShoots from the seedlings (10 cm shoot stage)47.913843.665940.59540
INF1Young developing inflorescences (5mm)51.838457.632853.46320
INF2Developing inflorescences (1-1.5 cm)69.347873.583654.23930
ROORoots from the seedlings (10 cm shoot stage)24.380128.355423.03160
NODDeveloping tillers at six leaf stage, 3rd internode19.135838.332734.37390
CAR5Developing grain, bracts removed (5 DPA)55.296845.286543.62680
CAR15Developing grain, bracts removed (15 DPA)41.153438.551739.97330



CDS Structure of MLOC_54800






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK360084
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360084CUST_24291_PI427708080NoneNoneNone
MLOC_26120.1NoneAvailableNonecontig_1736973 (Not mapped)
MLOC_26276.1NoneAvailableNonecontig_174584 (Mapped)
MLOC_28175.1NoneAvailableNonecontig_1897748 (Not mapped)
MLOC_44466.1NoneAvailableNonecontig_27478 (Not mapped)
MLOC_46687.1NoneAvailableNonecontig_29425 (Mapped)
MLOC_48283.1NoneAvailableNonecontig_320622 (Not mapped)
MLOC_53046.1NoneAvailableNonecontig_380162 (Mapped)
MLOC_54800.1NoneAvailableNonecontig_394111 (Not mapped)
MLOC_78810.2NoneAvailableAvailablecontig_8200 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10None-----