MLOC_548 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 12.1036 | 8.90879 | 8.34632 | 10.8642 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 5.50902 | 8.66694 | 10.9105 | 7.73354 |
| INF1 | Young developing inflorescences (5mm) | 6.5179 | 5.87717 | 5.30288 | 5.85981 |
| INF2 | Developing inflorescences (1-1.5 cm) | 4.39253 | 4.88744 | 5.11382 | 6.3327 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 20.149 | 15.88 | 16.5148 | 21.5145 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 11.7887 | 7.43186 | 11.7099 | 23.9472 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 8.1163 | 8.53892 | 7.09539 | 9.54964 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 3.20563 | 3.62408 | 2.76574 | 9.43183 |
CDS Structure of MLOC_548
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_548.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g47730.1 |
+1 |
2e-132 |
385 |
197/223 (88%) |
13101.m04939 protein ras-related protein, putative, expressed |
| TAIR PP10 |
AT5G60860.1 |
+1 |
4e-121 |
355 |
173/214 (81%) |
| Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217 |
