- Predicted Gene MLOC_54797
MLOC_54797 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54797_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54797_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 12.8574 | 10.8821 | 9.9069 | 11.7317 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.0589 | 5.27224 | 5.7206 | 5.1047 |
INF1 | Young developing inflorescences (5mm) | 11.3872 | 10.926 | 10.7134 | 9.64775 |
INF2 | Developing inflorescences (1-1.5 cm) | 9.42551 | 8.64419 | 8.50845 | 10.008 |
ROO | Roots from the seedlings (10 cm shoot stage) | 7.55485 | 9.15352 | 8.05879 | 10.793 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.85667 | 3.37529 | 5.17463 | 11.4617 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.54912 | 9.24097 | 8.36631 | 8.6551 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.49967 | 1.08682 | 1.57081 | 3.3482 |
CDS Structure of MLOC_54797
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54797.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g10360.1 |
+2 |
7e-154 |
447 |
226/289 (78%) |
13103.m01157 protein SURF1, putative, expressed |
TAIR PP10 |
AT3G17910.1 |
+2 |
5e-106 |
324 |
157/284 (55%) |
| Symbols: SURF1 | Surfeit locus 1 cytochrome c oxidase biogenesis protein | chr3:6133581-6136053 FORWARD LENGTH=354 |