MLOC_54797 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.857410.88219.906911.7317
LEAShoots from the seedlings (10 cm shoot stage)7.05895.272245.72065.1047
INF1Young developing inflorescences (5mm)11.387210.92610.71349.64775
INF2Developing inflorescences (1-1.5 cm)9.425518.644198.5084510.008
ROORoots from the seedlings (10 cm shoot stage)7.554859.153528.0587910.793
NODDeveloping tillers at six leaf stage, 3rd internode2.856673.375295.1746311.4617
CAR5Developing grain, bracts removed (5 DPA)7.549129.240978.366318.6551
CAR15Developing grain, bracts removed (15 DPA)1.499671.086821.570813.3482



CDS Structure of MLOC_54797






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54797.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364120NoneNoneNoneNone
MLOC_54797.2CUST_3302_PI427708080AvailableAvailablecontig_39411 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g10360.1 +2 7e-154 447 226/289 (78%) 13103.m01157 protein SURF1, putative, expressed
TAIR PP10 AT3G17910.1 +2 5e-106 324 157/284 (55%) | Symbols: SURF1 | Surfeit locus 1 cytochrome c oxidase biogenesis protein | chr3:6133581-6136053 FORWARD LENGTH=354