MLOC_54794 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.815663.565862.858082.81043
LEAShoots from the seedlings (10 cm shoot stage)12.98254.103532.862755.98333
INF1Young developing inflorescences (5mm)0.1165490.1868820.171910.120202
INF2Developing inflorescences (1-1.5 cm)0.2470260.2918690.3531590.28877
ROORoots from the seedlings (10 cm shoot stage)0.1588361.608630.6458781.51204
NODDeveloping tillers at six leaf stage, 3rd internode0.7248021.214670.02619193.33084
CAR5Developing grain, bracts removed (5 DPA)2.545592.360462.810652.27352
CAR15Developing grain, bracts removed (15 DPA)11.723712.215912.862224.6954



CDS Structure of MLOC_54794






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54794.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54794.6CUST_13261_PI427708080AvailableAvailablecontig_39409 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g43120.1 -3 0.0 2086 1048/1242 (84%) 13108.m04668 protein Plant PDR ABC transporter associated domain containing protein, expressed
TAIR PP10 AT1G66950.1 -3 0.0 1347 658/1249 (53%) | Symbols: PDR11, ATPDR11 | pleiotropic drug resistance 11 | chr1:24978239-24984461 FORWARD LENGTH=1454