MLOC_54768 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0596348000.0809964
LEAShoots from the seedlings (10 cm shoot stage)0.0818148000.0740579
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)00.032703600.142877
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)20.004622.686519.689421.3252
CAR15Developing grain, bracts removed (15 DPA)9.15978.892111.460424.9118



CDS Structure of MLOC_54768






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54768.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372380NoneNoneNoneNone
MLOC_54768.1CUST_3300_PI427708080AvailableAvailablecontig_39383 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g21040.1 -3 9e-32 130 121/423 (29%) 13102.m02357 protein aspartic proteinase nepenthesin precursor, putative, expressed
TAIR PP10 AT3G18490.1 -3 3e-31 127 111/379 (29%) Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500