MLOC_54764 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.923972.676652.494542.20091
LEAShoots from the seedlings (10 cm shoot stage)3.009831.547851.076441.64922
INF1Young developing inflorescences (5mm)4.976394.360775.328084.06467
INF2Developing inflorescences (1-1.5 cm)5.947646.623696.089026.75194
ROORoots from the seedlings (10 cm shoot stage)1.261352.80432.893773.16489
NODDeveloping tillers at six leaf stage, 3rd internode1.671752.521812.141048.029
CAR5Developing grain, bracts removed (5 DPA)6.551735.866315.475085.68575
CAR15Developing grain, bracts removed (15 DPA)1.710071.546351.814093.72159



CDS Structure of MLOC_54764






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54764.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54764.2CUST_13258_PI427708080AvailableAvailablecontig_39378 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g45880.1 -1 0.0 538 317/761 (42%) 13106.m04843 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 ATMG00860.1 -1 8e-15 53 26/59 (44%) | Symbols: ORF158 | DNA/RNA polymerases superfamily protein | chrM:235916-236392 FORWARD LENGTH=158