- Predicted Gene MLOC_54762
MLOC_54762 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 42.548 | 60.6466 | 56.8408 | 54.3452 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 48.9344 | 70.4531 | 77.0984 | 54.1075 |
INF1 | Young developing inflorescences (5mm) | 15.0862 | 18.7866 | 32.1234 | 17.4493 |
INF2 | Developing inflorescences (1-1.5 cm) | 11.1832 | 12.0446 | 13.1857 | 12.7238 |
ROO | Roots from the seedlings (10 cm shoot stage) | 85.2569 | 73.0477 | 63.1024 | 86.2102 |
NOD | Developing tillers at six leaf stage, 3rd internode | 29.2678 | 23.4525 | 22.4404 | 72.6314 |
CAR5 | Developing grain, bracts removed (5 DPA) | 12.2191 | 12.7009 | 11.7034 | 11.5208 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.70956 | 5.29599 | 4.28993 | 11.89 |
CDS Structure of MLOC_54762
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54762.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g36560.2 |
-3 |
0.0 |
1142 |
714/802 (89%) |
13104.m11901 protein chloride channel protein, putative, expressed |
TAIR PP10 |
AT5G49890.1 |
-3 |
0.0 |
895 |
567/777 (73%) |
| Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779 |