MLOC_54762 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.54860.646656.840854.3452
LEAShoots from the seedlings (10 cm shoot stage)48.934470.453177.098454.1075
INF1Young developing inflorescences (5mm)15.086218.786632.123417.4493
INF2Developing inflorescences (1-1.5 cm)11.183212.044613.185712.7238
ROORoots from the seedlings (10 cm shoot stage)85.256973.047763.102486.2102
NODDeveloping tillers at six leaf stage, 3rd internode29.267823.452522.440472.6314
CAR5Developing grain, bracts removed (5 DPA)12.219112.700911.703411.5208
CAR15Developing grain, bracts removed (15 DPA)5.709565.295994.2899311.89



CDS Structure of MLOC_54762






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54762.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248202.1NoneNoneNoneNone
MLOC_54762.1CUST_3299_PI427708080AvailableAvailablecontig_39376 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g36560.2 -3 0.0 1142 714/802 (89%) 13104.m11901 protein chloride channel protein, putative, expressed
TAIR PP10 AT5G49890.1 -3 0.0 895 567/777 (73%) | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779