MLOC_54759 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.14330.363926.910825.5123
LEAShoots from the seedlings (10 cm shoot stage)101.0899.495459.219277.4129
INF1Young developing inflorescences (5mm)55.550348.407448.295442.5172
INF2Developing inflorescences (1-1.5 cm)43.788748.554943.882450.4801
ROORoots from the seedlings (10 cm shoot stage)8.6521921.432613.895524.4373
NODDeveloping tillers at six leaf stage, 3rd internode35.150734.885739.0573124.524
CAR5Developing grain, bracts removed (5 DPA)35.601629.183128.438530.2903
CAR15Developing grain, bracts removed (15 DPA)7.868237.268677.0141416.7741



CDS Structure of MLOC_54759






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54759.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54759.1CUST_13257_PI427708080AvailableAvailablecontig_39371 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g53310.1 +3 0.0 1757 938/1259 (75%) 13104.m05484 protein soluble starch synthase 3, chloroplast precursor, putative, expressed
TAIR PP10 AT1G11720.2 +3 0.0 1169 604/917 (66%) | Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840 FORWARD LENGTH=1094