MLOC_54732 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.085118.878266.469855.50696
LEAShoots from the seedlings (10 cm shoot stage)15.442217.097213.541910.4304
INF1Young developing inflorescences (5mm)15.164215.918214.61069.73586
INF2Developing inflorescences (1-1.5 cm)8.7576712.41759.221969.10523
ROORoots from the seedlings (10 cm shoot stage)2.520525.78813.792734.35727
NODDeveloping tillers at six leaf stage, 3rd internode1.815351.740832.287974.8133
CAR5Developing grain, bracts removed (5 DPA)12.328713.668612.21379.30144
CAR15Developing grain, bracts removed (15 DPA)2.843712.057841.239224.03744



CDS Structure of MLOC_54732






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54732.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54732.1CUST_12771_PI427708083AvailableAvailablecontig_393454 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g30200.2 -2 2e-47 164 78/81 (96%) 13107.m03043 protein tRNA synthetases class II domain containing protein, expressed
TAIR PP10 AT4G17300.1 -2 2e-38 139 68/81 (84%) | Symbols: NS1, OVA8, ATNS1 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:9681558-9684833 FORWARD LENGTH=567