MLOC_54704 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains33.568739.786437.155236.5288
LEAShoots from the seedlings (10 cm shoot stage)28.309230.370329.139824.5086
INF1Young developing inflorescences (5mm)79.509182.331283.13166.098
INF2Developing inflorescences (1-1.5 cm)72.279193.419372.768986.103
ROORoots from the seedlings (10 cm shoot stage)28.913540.238533.751944.3
NODDeveloping tillers at six leaf stage, 3rd internode7.0413811.09219.491140.4496
CAR5Developing grain, bracts removed (5 DPA)54.110154.791352.38950.2766
CAR15Developing grain, bracts removed (15 DPA)6.510186.116557.0371714.2357



CDS Structure of MLOC_54704






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54704.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54704.1CUST_13249_PI427708080AvailableAvailablecontig_39326 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g47500.1 +3 0.0 826 439/505 (87%) 13107.m05060 protein histone-arginine methyltransferase CARM1, putative, expressed
TAIR PP10 AT3G06930.1 +3 0.0 670 320/451 (71%) | Symbols: ATPRMT4B, PRMT4B | protein arginine methyltransferase 4B | chr3:2185469-2189296 REVERSE LENGTH=534