MLOC_54701 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains104.602116.673115.91593.318
LEAShoots from the seedlings (10 cm shoot stage)91.07575.418574.216558.2869
INF1Young developing inflorescences (5mm)78.371883.766282.174155.8833
INF2Developing inflorescences (1-1.5 cm)61.165768.185766.400158.5768
ROORoots from the seedlings (10 cm shoot stage)96.2168129.404110.95115.93
NODDeveloping tillers at six leaf stage, 3rd internode116.348106.21100.824276.451
CAR5Developing grain, bracts removed (5 DPA)109.316106.991117.94285.9847
CAR15Developing grain, bracts removed (15 DPA)31.424927.297130.568255.0167



CDS Structure of MLOC_54701






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54701.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365220NoneNoneNoneNone
MLOC_54701.1CUST_3287_PI427708080AvailableAvailablecontig_39323 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g07910.1 +1 0.0 926 537/561 (96%) 13111.m00826 protein transmembrane 9 superfamily member, putative, expressed
TAIR PP10 AT1G10950.1 +1 0.0 818 478/564 (85%) | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | chr1:3659322-3663622 FORWARD LENGTH=589