MLOC_547 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 7.98202 | 5.57543 | 5.00975 | 5.02997 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 5.64682 | 6.53314 | 9.37181 | 4.95286 |
| INF1 | Young developing inflorescences (5mm) | 3.61585 | 5.81721 | 6.20472 | 3.14339 |
| INF2 | Developing inflorescences (1-1.5 cm) | 7.66138 | 4.20591 | 6.51241 | 5.28535 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 5.26957 | 7.77984 | 7.75982 | 7.00646 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 11.6487 | 12.8095 | 15.3277 | 37.0785 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 3.94363 | 4.34856 | 4.72823 | 3.27004 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 3.9647 | 3.39671 | 4.00094 | 6.55189 |
CDS Structure of MLOC_547
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_547.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g47740.4 |
+2 |
4e-21 |
96 |
40/55 (73%) |
13101.m04943 protein zinc finger, C3HC4 type domain containing protein, expressed |
| TAIR PP10 |
AT1G45180.1 |
+2 |
2e-13 |
72 |
27/50 (54%) |
RING/U-box superfamily protein | chr1:17099335-17101683 FORWARD LENGTH=645 |
