- Predicted Gene MLOC_54695
MLOC_54695 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 27.5142 | 25.2844 | 24.6376 | 28.1347 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 28.25 | 27.6851 | 35.3515 | 27.058 |
INF1 | Young developing inflorescences (5mm) | 30.8412 | 36.096 | 44.3299 | 33.0117 |
INF2 | Developing inflorescences (1-1.5 cm) | 39.6674 | 45.6424 | 42.4808 | 50.9102 |
ROO | Roots from the seedlings (10 cm shoot stage) | 31.16 | 33.8545 | 31.2773 | 43.3314 |
NOD | Developing tillers at six leaf stage, 3rd internode | 26.0113 | 34.623 | 43.5919 | 125.186 |
CAR5 | Developing grain, bracts removed (5 DPA) | 21.1254 | 25.2995 | 21.2226 | 24.552 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.32204 | 5.12816 | 4.20627 | 12.8943 |
CDS Structure of MLOC_54695
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54695.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g37270.1 |
+2 |
2e-119 |
356 |
227/284 (80%) |
13107.m03834 protein MSP domain containing protein, putative, expressed |
TAIR PP10 |
AT4G21450.1 |
+2 |
2e-86 |
271 |
160/202 (79%) |
PapD-like superfamily protein | chr4:11426136-11428125 FORWARD LENGTH=295 |