MLOC_54695 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.514225.284424.637628.1347
LEAShoots from the seedlings (10 cm shoot stage)28.2527.685135.351527.058
INF1Young developing inflorescences (5mm)30.841236.09644.329933.0117
INF2Developing inflorescences (1-1.5 cm)39.667445.642442.480850.9102
ROORoots from the seedlings (10 cm shoot stage)31.1633.854531.277343.3314
NODDeveloping tillers at six leaf stage, 3rd internode26.011334.62343.5919125.186
CAR5Developing grain, bracts removed (5 DPA)21.125425.299521.222624.552
CAR15Developing grain, bracts removed (15 DPA)5.322045.128164.2062712.8943



CDS Structure of MLOC_54695






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54695.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250350.1NoneNoneNoneNone
MLOC_54695.1CUST_3286_PI427708080AvailableAvailablecontig_39318 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g37270.1 +2 2e-119 356 227/284 (80%) 13107.m03834 protein MSP domain containing protein, putative, expressed
TAIR PP10 AT4G21450.1 +2 2e-86 271 160/202 (79%) PapD-like superfamily protein | chr4:11426136-11428125 FORWARD LENGTH=295