MLOC_54692 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.280713.094713.428913.0349
LEAShoots from the seedlings (10 cm shoot stage)6.992785.07088.088135.70736
INF1Young developing inflorescences (5mm)22.266924.072923.39918.8785
INF2Developing inflorescences (1-1.5 cm)18.201517.024517.525518.0337
ROORoots from the seedlings (10 cm shoot stage)7.1648610.717910.308811.6434
NODDeveloping tillers at six leaf stage, 3rd internode0.3426580.9508953.305184.19046
CAR5Developing grain, bracts removed (5 DPA)14.191217.320115.714614.3353
CAR15Developing grain, bracts removed (15 DPA)4.688074.265914.580889.89609



CDS Structure of MLOC_54692






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54692.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250701.1NoneNoneNoneNone
MLOC_54692.1CUST_3285_PI427708080AvailableAvailablecontig_39316 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51100.1 -2 4e-116 352 192/335 (57%) 13102.m05806 protein arsenical pump-driving ATPase, putative, expressed
TAIR PP10 AT3G10350.1 -2 2e-113 345 187/350 (53%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3208310-3210678 FORWARD LENGTH=411