- Predicted Gene MLOC_54689
MLOC_54689 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54689_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54689_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 2.56441 | 7.13209 | 6.10119 | 5.9185 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.79305 | 7.17799 | 5.08267 | 5.95394 |
INF1 | Young developing inflorescences (5mm) | 9.52011 | 9.10259 | 7.72718 | 7.48377 |
INF2 | Developing inflorescences (1-1.5 cm) | 10.9267 | 10.5872 | 9.26247 | 11.2935 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.54924 | 6.00673 | 4.52937 | 6.78012 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.80985 | 5.49287 | 4.26894 | 18.6359 |
CAR5 | Developing grain, bracts removed (5 DPA) | 12.1629 | 11.3379 | 11.6285 | 11.2433 |
CAR15 | Developing grain, bracts removed (15 DPA) | 6.81282 | 5.96693 | 6.00319 | 14.2799 |
CDS Structure of MLOC_54689
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54689.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os11g05130.1 |
+2 |
0.0 |
2227 |
1264/1919 (66%) |
13111.m00486 protein PHD-finger family protein, expressed |
TAIR PP10 |
AT5G35210.2 |
+2 |
5e-147 |
499 |
368/1122 (33%) |
metalloendopeptidases;zinc ion binding;DNA binding | chr5:13476213-13482238 REVERSE LENGTH=1539 |