MLOC_54689 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.564417.132096.101195.9185
LEAShoots from the seedlings (10 cm shoot stage)7.793057.177995.082675.95394
INF1Young developing inflorescences (5mm)9.520119.102597.727187.48377
INF2Developing inflorescences (1-1.5 cm)10.926710.58729.2624711.2935
ROORoots from the seedlings (10 cm shoot stage)2.549246.006734.529376.78012
NODDeveloping tillers at six leaf stage, 3rd internode3.809855.492874.2689418.6359
CAR5Developing grain, bracts removed (5 DPA)12.162911.337911.628511.2433
CAR15Developing grain, bracts removed (15 DPA)6.812825.966936.0031914.2799



CDS Structure of MLOC_54689






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54689.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54689.2CUST_13244_PI427708080AvailableAvailablecontig_39312 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g05130.1 +2 0.0 2227 1264/1919 (66%) 13111.m00486 protein PHD-finger family protein, expressed
TAIR PP10 AT5G35210.2 +2 5e-147 499 368/1122 (33%) metalloendopeptidases;zinc ion binding;DNA binding | chr5:13476213-13482238 REVERSE LENGTH=1539