MLOC_54679 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.974282.131222.511981.77009
LEAShoots from the seedlings (10 cm shoot stage)4.315173.743114.356913.10824
INF1Young developing inflorescences (5mm)3.564083.992014.295592.59045
INF2Developing inflorescences (1-1.5 cm)5.802635.358735.016274.82234
ROORoots from the seedlings (10 cm shoot stage)1.270662.435932.249942.19854
NODDeveloping tillers at six leaf stage, 3rd internode3.226132.597383.111358.36107
CAR5Developing grain, bracts removed (5 DPA)2.32532.599953.102061.98534
CAR15Developing grain, bracts removed (15 DPA)2.314772.336822.15154.05587



CDS Structure of MLOC_54679






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54679.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54679.5CUST_12768_PI427708083AvailableAvailablecontig_39300 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g24710.2 +1 4e-55 117 55/66 (83%) 13109.m02352 protein alpha/beta hydrolase fold, putative, expressed
TAIR PP10 AT1G74640.1 +1 4e-22 100 47/66 (71%) alpha/beta-Hydrolases superfamily protein | chr1:28032849-28034659 FORWARD LENGTH=370