- Predicted Gene MLOC_54675
MLOC_54675 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 19.8093 | 21.7076 | 18.1827 | 20.6982 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 10.2187 | 3.51187 | 2.19812 | 4.29661 |
| INF1 | Young developing inflorescences (5mm) | 53.1855 | 50.8618 | 52.7106 | 46.5781 |
| INF2 | Developing inflorescences (1-1.5 cm) | 80.0279 | 70.1455 | 66.5769 | 81.4141 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 20.0947 | 21.1521 | 19.2806 | 23.3978 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 3.43766 | 4.95427 | 6.63182 | 14.7444 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 29.3413 | 26.926 | 26.6074 | 27.3327 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 3.86798 | 3.47806 | 4.42222 | 9.57241 |
CDS Structure of MLOC_54675
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54675.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os10g42230.2 |
-2 |
7e-157 |
470 |
308/376 (82%) |
13110.m03964 protein AT hook motif domain containing protein, expressed |
| TAIR PP10 |
AT2G33620.4 |
-2 |
9e-63 |
217 |
130/239 (54%) |
AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351 |
