- Predicted Gene MLOC_54672
MLOC_54672 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 0.220933 | 0.142091 | 0.20682 | 0.208202 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 17.5542 | 33.9967 | 37.4922 | 25.8096 |
| INF1 | Young developing inflorescences (5mm) | 0.074879 | 0.0489229 | 0.139565 | 0.0813653 |
| INF2 | Developing inflorescences (1-1.5 cm) | 0.0582599 | 0 | 0 | 0.023618 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0.0333859 | 0 | 0.0277918 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 5.66835 | 5.54636 | 12.4042 | 19.8641 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 1.41432 | 1.47066 | 1.60926 | 1.71729 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.410384 | 0.347725 | 0.293523 | 0.966918 |
CDS Structure of MLOC_54672
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54672.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g54640.1 |
-3 |
1e-173 |
501 |
250/283 (88%) |
13104.m05654 protein peptidase, cysteine peptidase active site, putative, expressed |
| TAIR PP10 |
AT2G21960.1 |
-3 |
1e-150 |
442 |
217/283 (77%) |
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr2:9354990-9356958 FORWARD LENGTH=332 |