- Predicted Gene MLOC_54627
MLOC_54627 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54627_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54627_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 26.0314 | 42.9371 | 39.2569 | 36.8195 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 29.0045 | 15.5675 | 16.2526 | 17.267 |
INF1 | Young developing inflorescences (5mm) | 14.8163 | 12.4711 | 11.7702 | 10.6713 |
INF2 | Developing inflorescences (1-1.5 cm) | 10.7698 | 11.7214 | 11.7949 | 11.8013 |
ROO | Roots from the seedlings (10 cm shoot stage) | 22.1985 | 37.3743 | 28.0552 | 40.1902 |
NOD | Developing tillers at six leaf stage, 3rd internode | 33.8578 | 28.6521 | 15.8068 | 85.5819 |
CAR5 | Developing grain, bracts removed (5 DPA) | 29.4642 | 25.9782 | 29.6796 | 25.9153 |
CAR15 | Developing grain, bracts removed (15 DPA) | 10.3292 | 10.4942 | 10.8981 | 22.5808 |
CDS Structure of MLOC_54627
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54627.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g17430.1 |
-2 |
0.0 |
1568 |
869/950 (91%) |
13101.m01949 protein coatomer subunit beta-1, putative, expressed |
TAIR PP10 |
AT4G31480.2 |
-2 |
0.0 |
1299 |
704/951 (74%) |
Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948 |