MLOC_54627 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.031442.937139.256936.8195
LEAShoots from the seedlings (10 cm shoot stage)29.004515.567516.252617.267
INF1Young developing inflorescences (5mm)14.816312.471111.770210.6713
INF2Developing inflorescences (1-1.5 cm)10.769811.721411.794911.8013
ROORoots from the seedlings (10 cm shoot stage)22.198537.374328.055240.1902
NODDeveloping tillers at six leaf stage, 3rd internode33.857828.652115.806885.5819
CAR5Developing grain, bracts removed (5 DPA)29.464225.978229.679625.9153
CAR15Developing grain, bracts removed (15 DPA)10.329210.494210.898122.5808



CDS Structure of MLOC_54627






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54627.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373076NoneNoneNoneNone
MLOC_54627.2CUST_3281_PI427708080AvailableAvailablecontig_39261 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g17430.1 -2 0.0 1568 869/950 (91%) 13101.m01949 protein coatomer subunit beta-1, putative, expressed
TAIR PP10 AT4G31480.2 -2 0.0 1299 704/951 (74%) Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948