MLOC_54620 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains62.311445.899758.871561.0576
LEAShoots from the seedlings (10 cm shoot stage)24.619517.655227.127822.1893
INF1Young developing inflorescences (5mm)39.636439.582944.453340.6028
INF2Developing inflorescences (1-1.5 cm)31.068231.100241.148543.0686
ROORoots from the seedlings (10 cm shoot stage)63.180247.842763.147871.5565
NODDeveloping tillers at six leaf stage, 3rd internode17.26312.205913.413242.5149
CAR5Developing grain, bracts removed (5 DPA)30.688538.751235.334641.0119
CAR15Developing grain, bracts removed (15 DPA)8.517579.296677.4247723.7352



CDS Structure of MLOC_54620






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54620.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360320NoneNoneNoneNone
AK374746NoneNoneNoneNone
MLOC_54620.1CUST_3278_PI427708080AvailableAvailablecontig_39254 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g16874.3 +1 1e-41 140 66/79 (84%) 13103.m02010 protein expressed protein
TAIR PP10 AT1G47278.2 +1 1e-24 96 49/86 (57%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 37 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:17331263-17331726 FORWARD LENGTH=91