- Predicted Gene MLOC_54620
MLOC_54620 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 62.3114 | 45.8997 | 58.8715 | 61.0576 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 24.6195 | 17.6552 | 27.1278 | 22.1893 |
| INF1 | Young developing inflorescences (5mm) | 39.6364 | 39.5829 | 44.4533 | 40.6028 |
| INF2 | Developing inflorescences (1-1.5 cm) | 31.0682 | 31.1002 | 41.1485 | 43.0686 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 63.1802 | 47.8427 | 63.1478 | 71.5565 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 17.263 | 12.2059 | 13.4132 | 42.5149 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 30.6885 | 38.7512 | 35.3346 | 41.0119 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 8.51757 | 9.29667 | 7.42477 | 23.7352 |
CDS Structure of MLOC_54620
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54620.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g16874.3 |
+1 |
1e-41 |
140 |
66/79 (84%) |
13103.m02010 protein expressed protein |
| TAIR PP10 |
AT1G47278.2 |
+1 |
1e-24 |
96 |
49/86 (57%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 37 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:17331263-17331726 FORWARD LENGTH=91 |