MLOC_54619 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.394087.747356.902835.54653
LEAShoots from the seedlings (10 cm shoot stage)7.462142.785591.534373.4033
INF1Young developing inflorescences (5mm)40.477343.208645.300632.4521
INF2Developing inflorescences (1-1.5 cm)52.971860.769352.375156.0716
ROORoots from the seedlings (10 cm shoot stage)0.8117414.078442.908553.8818
NODDeveloping tillers at six leaf stage, 3rd internode0.5571590.4403440.08931361.25658
CAR5Developing grain, bracts removed (5 DPA)15.8714.726916.413113.6175
CAR15Developing grain, bracts removed (15 DPA)2.279211.58952.529024.25495



CDS Structure of MLOC_54619






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54619.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54619.1CUST_13235_PI427708080AvailableAvailablecontig_39254 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g38440.1 +3 0.0 927 466/717 (65%) 13109.m03824 protein ATXR, putative, expressed
TAIR PP10 AT1G05830.2 +3 1e-39 161 119/365 (33%) | Symbols: ATX2 | trithorax-like protein 2 | chr1:1754452-1761225 FORWARD LENGTH=1083