MLOC_54605 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.43729.7877911.73169.78014
LEAShoots from the seedlings (10 cm shoot stage)5.38637.744599.565026.14285
INF1Young developing inflorescences (5mm)4.080764.844934.577443.64244
INF2Developing inflorescences (1-1.5 cm)4.933866.083325.437045.78177
ROORoots from the seedlings (10 cm shoot stage)10.202210.32528.9070811.6373
NODDeveloping tillers at six leaf stage, 3rd internode6.839737.359024.7019722.1921
CAR5Developing grain, bracts removed (5 DPA)8.575098.615319.176788.1105
CAR15Developing grain, bracts removed (15 DPA)8.449369.251158.1011619.2104



CDS Structure of MLOC_54605






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54605.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366365NoneNoneNoneNone
MLOC_54605.1CUST_3275_PI427708080AvailableAvailablecontig_39244 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g53110.1 -2 9e-146 451 239/314 (76%) 13102.m06058 protein expressed protein
TAIR PP10 AT1G68140.2 -2 1e-70 241 114/209 (55%) Protein of unknown function (DUF1644) | chr1:25539410-25540414 REVERSE LENGTH=308