MLOC_54603 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.161310.09138.443866.8457
LEAShoots from the seedlings (10 cm shoot stage)7.149893.942433.023533.84237
INF1Young developing inflorescences (5mm)29.051626.234826.16219.336
INF2Developing inflorescences (1-1.5 cm)33.227729.119429.276829.114
ROORoots from the seedlings (10 cm shoot stage)1.662756.4784.573215.77933
NODDeveloping tillers at six leaf stage, 3rd internode1.244451.957992.309536.36224
CAR5Developing grain, bracts removed (5 DPA)10.07369.356429.038137.90118
CAR15Developing grain, bracts removed (15 DPA)2.959052.841612.412395.21343



CDS Structure of MLOC_54603






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54603.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54603.1CUST_13234_PI427708080AvailableAvailablecontig_39244 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g53120.1 +2 0.0 1223 675/992 (68%) 13102.m06059 protein Peptidase family C50, putative, expressed
TAIR PP10 AT4G22970.1 +2 0.0 680 501/1434 (35%) | Symbols: RSW4, AESP, ESP | homolog of separase | chr4:12033703-12043572 REVERSE LENGTH=2180