MLOC_54602 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.75518.59315.809918.081
LEAShoots from the seedlings (10 cm shoot stage)9.048861.385211.673893.7561
INF1Young developing inflorescences (5mm)85.198996.811490.305279.826
INF2Developing inflorescences (1-1.5 cm)92.9806115.58994.2662122.215
ROORoots from the seedlings (10 cm shoot stage)3.3002410.11758.8131712.5827
NODDeveloping tillers at six leaf stage, 3rd internode0.5989910.2949940.1399791.04351
CAR5Developing grain, bracts removed (5 DPA)17.102916.491917.197818.1759
CAR15Developing grain, bracts removed (15 DPA)1.492780.7994331.740523.07329



CDS Structure of MLOC_54602






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54602.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374640NoneNoneNoneNone
MLOC_54602.1CUST_3274_PI427708080AvailableAvailablecontig_39242 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g33890.1 +2 0.0 816 449/560 (80%) 13105.m03518 protein microtubule associated protein, putative, expressed
TAIR PP10 AT5G55230.1 +2 5e-149 451 259/557 (46%) | Symbols: ATMAP65-1, MAP65-1 | microtubule-associated proteins 65-1 | chr5:22402716-22405182 FORWARD LENGTH=587