MLOC_54601 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.007211.168390.9622611.1652
LEAShoots from the seedlings (10 cm shoot stage)0.7661020.432530.3717060.441363
INF1Young developing inflorescences (5mm)0.10073800.0256080.0560924
INF2Developing inflorescences (1-1.5 cm)0.02183430.3176010.262910.25632
ROORoots from the seedlings (10 cm shoot stage)43.936319.096521.191626.1868
NODDeveloping tillers at six leaf stage, 3rd internode000.04488160.0912139
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_54601






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54601.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54601.1CUST_13233_PI427708080AvailableAvailablecontig_39242 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g33900.1 +2 0.0 638 337/403 (84%) 13105.m03520 protein auxin-induced protein 5NG4, putative, expressed
TAIR PP10 AT5G07050.1 +2 7e-154 451 234/383 (61%) nodulin MtN21 /EamA-like transporter family protein | chr5:2191533-2193416 REVERSE LENGTH=402