MLOC_54590 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.193091.88431.690932.53921
LEAShoots from the seedlings (10 cm shoot stage)1.046940.4748130.945050.769684
INF1Young developing inflorescences (5mm)0.05785560.06474320.08354650.0646988
INF2Developing inflorescences (1-1.5 cm)00.072327300.0407933
ROORoots from the seedlings (10 cm shoot stage)1.64722.168320.8260152.87869
NODDeveloping tillers at six leaf stage, 3rd internode9.886687.92570.62258223.0886
CAR5Developing grain, bracts removed (5 DPA)0.118570.02895790.06139890.0843741
CAR15Developing grain, bracts removed (15 DPA)4.949584.759233.5867110.5441



CDS Structure of MLOC_54590






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54590.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371370NoneNoneNoneNone
MLOC_54590.1CUST_3270_PI427708080AvailableAvailablecontig_39233 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g49280.1 -1 2e-90 288 182/319 (57%) 13101.m05123 protein zinc finger family protein, putative, expressed
TAIR PP10 AT2G01275.2 -1 7e-40 148 97/274 (35%) RING/FYVE/PHD zinc finger superfamily protein | chr2:142610-143809 REVERSE LENGTH=259