MLOC_54589 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains433.433327.356299.494333.406
LEAShoots from the seedlings (10 cm shoot stage)170.642109.646133.198107.231
INF1Young developing inflorescences (5mm)629.079588.796548.023506.386
INF2Developing inflorescences (1-1.5 cm)656.978468.986508.747595.987
ROORoots from the seedlings (10 cm shoot stage)322.488282.635292.409304.889
NODDeveloping tillers at six leaf stage, 3rd internode19.237920.259547.021669.5424
CAR5Developing grain, bracts removed (5 DPA)398.966397.09378.469380.055
CAR15Developing grain, bracts removed (15 DPA)131.801136.394106.165305.518



CDS Structure of MLOC_54589






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54589.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366964NoneNoneNoneNone
MLOC_54589.1CUST_3269_PI427708080AvailableAvailablecontig_39233 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g49290.1 +2 0.0 601 303/333 (91%) 13101.m05124 protein WD repeat-containing protein, putative, expressed
TAIR PP10 AT3G18130.1 +2 4e-161 465 230/335 (69%) | Symbols: RACK1C_AT | receptor for activated C kinase 1C | chr3:6211109-6212371 REVERSE LENGTH=326