MLOC_54588 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.63497.45557.887646.86658
LEAShoots from the seedlings (10 cm shoot stage)5.587373.430313.794953.61424
INF1Young developing inflorescences (5mm)8.763988.409049.333717.0512
INF2Developing inflorescences (1-1.5 cm)6.741637.76167.590337.70907
ROORoots from the seedlings (10 cm shoot stage)3.8296.220357.564626.81184
NODDeveloping tillers at six leaf stage, 3rd internode4.04443.381184.1395311.3297
CAR5Developing grain, bracts removed (5 DPA)5.571026.507955.838435.54834
CAR15Developing grain, bracts removed (15 DPA)1.33691.075991.205192.62114



CDS Structure of MLOC_54588






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54588.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364418NoneNoneNoneNone
MLOC_54588.1CUST_3268_PI427708080AvailableAvailablecontig_39233 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g49250.1 +2 7e-110 357 168/214 (79%) 13101.m05120 protein methyltransferase, putative, expressed
TAIR PP10 AT1G66680.1 +2 6e-119 380 209/375 (56%) | Symbols: AR401 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:24866352-24868888 REVERSE LENGTH=358