- Predicted Gene MLOC_54583
MLOC_54583 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 2.03016 | 1.94909 | 2.04365 | 1.72084 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 1.11165 | 0.813807 | 1.10468 | 0.750112 |
| INF1 | Young developing inflorescences (5mm) | 9.66642 | 10.6991 | 8.36689 | 7.04538 |
| INF2 | Developing inflorescences (1-1.5 cm) | 6.13556 | 6.11583 | 5.55393 | 5.76442 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.907699 | 2.21239 | 2.63783 | 1.97188 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.0224183 | 0.0157521 | 0.0153549 | 0.0439945 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 1.80981 | 2.07047 | 2.01174 | 1.64424 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.549869 | 0.655629 | 0.417991 | 1.13596 |
CDS Structure of MLOC_54583
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54583.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g03820.1 |
-1 |
0.0 |
589 |
371/584 (64%) |
13102.m00376 protein expressed protein |
| TAIR PP10 |
AT3G26750.1 |
-1 |
1e-55 |
201 |
159/493 (32%) |
CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9840139-9841719 REVERSE LENGTH=526 |