MLOC_54583 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.030161.949092.043651.72084
LEAShoots from the seedlings (10 cm shoot stage)1.111650.8138071.104680.750112
INF1Young developing inflorescences (5mm)9.6664210.69918.366897.04538
INF2Developing inflorescences (1-1.5 cm)6.135566.115835.553935.76442
ROORoots from the seedlings (10 cm shoot stage)0.9076992.212392.637831.97188
NODDeveloping tillers at six leaf stage, 3rd internode0.02241830.01575210.01535490.0439945
CAR5Developing grain, bracts removed (5 DPA)1.809812.070472.011741.64424
CAR15Developing grain, bracts removed (15 DPA)0.5498690.6556290.4179911.13596



CDS Structure of MLOC_54583






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54583.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54583.1CUST_13231_PI427708080AvailableAvailablecontig_39228 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g03820.1 -1 0.0 589 371/584 (64%) 13102.m00376 protein expressed protein
TAIR PP10 AT3G26750.1 -1 1e-55 201 159/493 (32%) CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9840139-9841719 REVERSE LENGTH=526