MLOC_54563 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.103916.952046.812574.67038
LEAShoots from the seedlings (10 cm shoot stage)7.372696.017444.469064.39479
INF1Young developing inflorescences (5mm)13.59213.370213.8749.15768
INF2Developing inflorescences (1-1.5 cm)14.782615.826814.022813.6665
ROORoots from the seedlings (10 cm shoot stage)2.343445.889753.677174.85567
NODDeveloping tillers at six leaf stage, 3rd internode0.7281711.117621.701713.45679
CAR5Developing grain, bracts removed (5 DPA)10.00848.366118.924767.12665
CAR15Developing grain, bracts removed (15 DPA)3.421092.886712.469355.719



CDS Structure of MLOC_54563






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54563.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54563.2CUST_17743_PI427708080AvailableAvailablecontig_39214 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g33340.1 +3 1e-163 514 252/320 (79%) 13107.m03387 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT5G54910.1 +3 1e-129 421 207/322 (64%) DEA(D/H)-box RNA helicase family protein | chr5:22298668-22301719 REVERSE LENGTH=739