- Predicted Gene MLOC_54563
MLOC_54563 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54563_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54563_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 3.10391 | 6.95204 | 6.81257 | 4.67038 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.37269 | 6.01744 | 4.46906 | 4.39479 |
INF1 | Young developing inflorescences (5mm) | 13.592 | 13.3702 | 13.874 | 9.15768 |
INF2 | Developing inflorescences (1-1.5 cm) | 14.7826 | 15.8268 | 14.0228 | 13.6665 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.34344 | 5.88975 | 3.67717 | 4.85567 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.728171 | 1.11762 | 1.70171 | 3.45679 |
CAR5 | Developing grain, bracts removed (5 DPA) | 10.0084 | 8.36611 | 8.92476 | 7.12665 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.42109 | 2.88671 | 2.46935 | 5.719 |
CDS Structure of MLOC_54563
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54563.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g33340.1 |
+3 |
1e-163 |
514 |
252/320 (79%) |
13107.m03387 protein DEAD-box ATP-dependent RNA helicase, putative, expressed |
TAIR PP10 |
AT5G54910.1 |
+3 |
1e-129 |
421 |
207/322 (64%) |
DEA(D/H)-box RNA helicase family protein | chr5:22298668-22301719 REVERSE LENGTH=739 |