MLOC_54560 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.713752.191782.193562.38656
LEAShoots from the seedlings (10 cm shoot stage)0.9020950.2524910.7051390.472871
INF1Young developing inflorescences (5mm)4.377915.002725.189493.98202
INF2Developing inflorescences (1-1.5 cm)3.206225.454633.718614.49891
ROORoots from the seedlings (10 cm shoot stage)2.037591.932251.558971.90792
NODDeveloping tillers at six leaf stage, 3rd internode0.03032450.08867070.2303480.320592
CAR5Developing grain, bracts removed (5 DPA)1.63543.217173.459762.61137
CAR15Developing grain, bracts removed (15 DPA)0.5758030.4341250.7269551.28033



CDS Structure of MLOC_54560






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54560.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368721NoneNoneNoneNone
MLOC_54560.1CUST_3265_PI427708080AvailableAvailablecontig_39210 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g38220.1 -1 3e-108 325 191/224 (85%) 13107.m03945 protein expressed protein
TAIR PP10 AT5G49560.1 -1 3e-40 147 98/227 (43%) Putative methyltransferase family protein | chr5:20110961-20111785 REVERSE LENGTH=274