MLOC_54547 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.4062824.626117.821318.6655
LEAShoots from the seedlings (10 cm shoot stage)23.91216.392312.493616.1008
INF1Young developing inflorescences (5mm)64.466964.374155.547252.936
INF2Developing inflorescences (1-1.5 cm)66.447366.834354.210374.7388
ROORoots from the seedlings (10 cm shoot stage)6.9504711.05769.2967213.9992
NODDeveloping tillers at six leaf stage, 3rd internode6.7866311.18849.6458442.4361
CAR5Developing grain, bracts removed (5 DPA)35.130931.177737.556636.321
CAR15Developing grain, bracts removed (15 DPA)13.567912.892113.607231.4776



CDS Structure of MLOC_54547






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54547.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54547.1CUST_13227_PI427708080AvailableAvailablecontig_39203 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g50799.1 -3 0.0 745 401/473 (85%) 13102.m05766 protein nuclear-pore anchor, putative, expressed
TAIR PP10 AT1G79280.1 -3 0.0 651 356/722 (49%) | Symbols: NUA, AtTPR | nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2093