- Predicted Gene MLOC_54547
MLOC_54547 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54547_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54547_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 3.40628 | 24.6261 | 17.8213 | 18.6655 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 23.912 | 16.3923 | 12.4936 | 16.1008 |
INF1 | Young developing inflorescences (5mm) | 64.4669 | 64.3741 | 55.5472 | 52.936 |
INF2 | Developing inflorescences (1-1.5 cm) | 66.4473 | 66.8343 | 54.2103 | 74.7388 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.95047 | 11.0576 | 9.29672 | 13.9992 |
NOD | Developing tillers at six leaf stage, 3rd internode | 6.78663 | 11.1884 | 9.64584 | 42.4361 |
CAR5 | Developing grain, bracts removed (5 DPA) | 35.1309 | 31.1777 | 37.5566 | 36.321 |
CAR15 | Developing grain, bracts removed (15 DPA) | 13.5679 | 12.8921 | 13.6072 | 31.4776 |
CDS Structure of MLOC_54547
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54547.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g50799.1 |
-3 |
0.0 |
745 |
401/473 (85%) |
13102.m05766 protein nuclear-pore anchor, putative, expressed |
TAIR PP10 |
AT1G79280.1 |
-3 |
0.0 |
651 |
356/722 (49%) |
| Symbols: NUA, AtTPR | nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2093 |